PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g26110.1.p
Common NameBRADI_5g26110, LOC100822300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 306aa    MW: 31373.7 Da    PI: 5.6601
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g26110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.4e-072270245
                      SSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45
                      g WT e ++ + +av+  G +       W+  a+ +  g+t+++++ ++ 
  Bradi5g26110.1.p 22 GGWTREQEKAFENAVAAAGEEapegdaAWEEMAAAVE-GKTAEEVRRHYE 70
                      67***********************************.**********95 PP

2Myb_DNA-binding39.81.1e-12137181347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  Bradi5g26110.1.p 137 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 181
                       6*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.971977IPR017884SANT domain
SMARTSM007174.9E-42075IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-82379IPR009057Homeodomain-like
CDDcd001674.32E-52473No hitNo description
PROSITE profilePS5129416.605130186IPR017930Myb domain
SuperFamilySSF466892.01E-16132187IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-17134184IPR006447Myb domain, plants
SMARTSM007179.3E-11134184IPR001005SANT/Myb domain
PfamPF002493.5E-11137181IPR001005SANT/Myb domain
CDDcd001673.35E-10137182No hitNo description
Gene3DG3DSA:1.10.10.601.0E-10137180IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAVEEASSSG GEEGSGSGSG SGGWTREQEK AFENAVAAAG EEAPEGDAAW EEMAAAVEGK  60
TAEEVRRHYE LLVEDVDGIE SGRVPLLVYA GDAAAAEEGG SGGGGGGKKG GGGGGGGHGE  120
KVSAAKSAEQ ERRKGIAWTE DEHRLFLLGL EKYGKGDWRS ISRNFVISRT PTQVASHAQK  180
YFIRLNSMNR ERRRSSIHDI TSVNNGDTSA AQGPITGTNG QVANPGKSPK QPLQPANPPP  240
GVDAYGTTIG QPVGGPLVSA VGTPVSLPVP APPHLAYGMH APVPGTVVPR APINMPYPMP  300
PPSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-141686270RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113GGKKGGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580818.20.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H76e-60DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0Q3EC240.0A0A0Q3EC24_BRADI; Uncharacterized protein
STRINGBRADI5G26110.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-76MYB family protein